diff --git a/Gemfile.lock b/Gemfile.lock
index 136245d5e5..39f5632d18 100644
--- a/Gemfile.lock
+++ b/Gemfile.lock
@@ -238,7 +238,7 @@ GEM
     datafoodconsortium-connector (1.0.0.pre.alpha.9)
       virtual_assembly-semantizer (~> 1.0, >= 1.0.5)
     date (3.3.3)
-    debug (1.9.0)
+    debug (1.9.1)
       irb (~> 1.10)
       reline (>= 0.3.8)
     debugger-linecache (1.2.0)
@@ -345,9 +345,9 @@ GEM
       ruby-vips (>= 2.0.17, < 3)
     immigrant (0.3.6)
       activerecord (>= 3.0)
-    io-console (0.6.0)
+    io-console (0.7.1)
     ipaddress (0.8.3)
-    irb (1.10.1)
+    irb (1.11.0)
       rdoc
       reline (>= 0.3.8)
     jmespath (1.6.2)
@@ -489,7 +489,7 @@ GEM
     pry (0.13.1)
       coderay (~> 1.1)
       method_source (~> 1.0)
-    psych (5.1.1.1)
+    psych (5.1.2)
       stringio
     public_suffix (5.0.4)
     puma (6.4.0)
@@ -569,7 +569,7 @@ GEM
     rdf (3.3.1)
       bcp47_spec (~> 0.2)
       link_header (~> 0.0, >= 0.0.8)
-    rdoc (6.6.1)
+    rdoc (6.6.2)
       psych (>= 4.0.0)
     redcarpet (3.6.0)
     redis (4.8.1)